Gene Details
ID's — REXO2 ; Q9Y3B8
Features
Properties
Classification of DNLCs into distinct cell subtypes (i.e. neuronal or glial)
Mitochondrial localization
| Alias | SwissProt Name | Old Accessions | Ensembl Gene | Description |
|---|---|---|---|---|
| SFN,SMFN,CGI-114 | ORN_HUMAN | B2R532,Q32Q18,Q53FT1,Q6FIC6,Q9UFY7 | ENSG00000076043 | Oligoribonuclease, mitochondrial |
Features
| Chromosome location | Molecular wt. (Da) | Protein length |
|---|---|---|
| 11q23.2 | 26833 | 237 |
Properties
| Subcellular Localization |
Enzyme ID | Domain | Function | Disease |
|---|---|---|---|---|
| Isoform 3: Cytoplasm | --- | Exonuclease | 3-to-5 exoribonuclease specific for small oligoribonucleotides. Active on small (primarily =5 nucleotides in length) single-stranded RNA and DNA oligomers. May have a role in cellular nucleotide recycling. {ECO:0000269|PubMed:23741365}. | --- |
Classification of DNLCs into distinct cell subtypes (i.e. neuronal or glial)
| Neurons | Oligodendrocyte progenitor cells |
Neuron progenitor cells |
Microglial cells | |
|---|---|---|---|---|
| Transcript expression count |
1338 | 332 | 144 | 208 |
| Average UMI count (unique molecular identifier) |
3.9 | 3.42 | 3.01 | 3.42 |
| Cell subtype | Neurons | FDR(q value) | 4.34734E-39 |
Mitochondrial localization
| Evidence |
|---|
| MitoCarta v2.0|GO|GeneCards: 5|PMID: 23371551 |
Complexes
Complex details — REXO2 ; Q9Y3B8
| Complex Id |
Number of subunits | Complex members | View Complex |
|---|---|---|---|
| CID007 | 13 | HTRA2, SOD2, NFU1, REXO2, CUTA, CS, DLD, MDH1, ECI1, SUCLG1, PITRM1, ABHD10, SUCLA2 | |
Interactions
PPI — REXO2 ; Q9Y3B8 interacts with
| Protein1 |
Protein2 |
Gene1 |
Gene2 |
Is Mt Protein1 |
Is Mt Protein2 |
Celltype Protein1 |
Celltype Protein2 |
Σ LLS DN Score |
Σ LLS ECSC Score |
Fold Change DF Interaction |
p-Value DF Interactions |
# Sources of supporting evidence | Description1 |
Description2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Q9NUJ1 | Q9Y3B8 | ABHD10 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Mycophenolic acid acyl-glucuronide esterase, mitochondrial | Oligoribonuclease, mitochondrial |
| O75390 | Q9Y3B8 | CS | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Citrate synthase, mitochondrial | Oligoribonuclease, mitochondrial |
| O60888 | Q9Y3B8 | CUTA | REXO2 | Y | Y | Neurons | Neurons | --- | --- | --- | --- | Y | Protein CutA | Oligoribonuclease, mitochondrial |
| P09622 | Q9Y3B8 | DLD | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Dihydrolipoyl dehydrogenase, mitochondrial | Oligoribonuclease, mitochondrial |
| Q9H3Z4 | Q9Y3B8 | DNAJC5 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | DnaJ homolog subfamily C member 5 {ECO:0000305} | Oligoribonuclease, mitochondrial |
| P42126 | Q9Y3B8 | ECI1 | REXO2 | Y | Y | Neurons | Neurons | --- | --- | --- | --- | Y | Enoyl-CoA delta isomerase 1, mitochondrial | Oligoribonuclease, mitochondrial |
| Q01581 | Q9Y3B8 | HMGCS1 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | --- | Hydroxymethylglutaryl-CoA synthase, cytoplasmic | Oligoribonuclease, mitochondrial |
| O43464 | Q9Y3B8 | HTRA2 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Serine protease HTRA2, mitochondrial | Oligoribonuclease, mitochondrial |
| P40925 | Q9Y3B8 | MDH1 | REXO2 | Y | Y | Neurons | Neurons | --- | --- | --- | --- | Y | Malate dehydrogenase, cytoplasmic | Oligoribonuclease, mitochondrial |
| Q8NCW5 | Q9Y3B8 | NAXE | REXO2 | Y | Y | Neurons | Neurons | --- | --- | 1.37 | 3.318e+0 | --- | NAD(P)H-hydrate epimerase {ECO:0000255|HAMAP-Rule:MF_03159} | Oligoribonuclease, mitochondrial |
| Q9UMS0 | Q9Y3B8 | NFU1 | REXO2 | Y | Y | Neurons | Neurons | --- | --- | --- | --- | Y | NFU1 iron-sulfur cluster scaffold homolog, mitochondrial | Oligoribonuclease, mitochondrial |
| P04181 | Q9Y3B8 | OAT | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | 1.36 | -2.315e+0 | Y | Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form | Oligoribonuclease, mitochondrial |
| Q5JRX3 | Q9Y3B8 | PITRM1 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Presequence protease, mitochondrial | Oligoribonuclease, mitochondrial |
| O75439 | Q9Y3B8 | PMPCB | REXO2 | Y | Y | Neurons | Neurons | --- | --- | 1.36 | 2.058e+0 | --- | Mitochondrial-processing peptidase subunit beta | Oligoribonuclease, mitochondrial |
| P04179 | Q9Y3B8 | SOD2 | REXO2 | Y | Y | --- | Neurons | --- | --- | 1.77 | 4.420e+0 | Y | Superoxide dismutase [Mn], mitochondrial | Oligoribonuclease, mitochondrial |
| Q9P2R7 | Q9Y3B8 | SUCLA2 | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | --- | --- | --- | Y | Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03220} | Oligoribonuclease, mitochondrial |
| P53597 | Q9Y3B8 | SUCLG1 | REXO2 | Y | Y | Neurons | Neurons | --- | --- | 1.58 | 4.427e+0 | Y | Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03222} | Oligoribonuclease, mitochondrial |
| P43897 | Q9Y3B8 | TSFM | REXO2 | Y | Y | Oligodendrocyte precursor cells | Neurons | --- | 1.63 | --- | --- | Y | Elongation factor Ts, mitochondrial {ECO:0000255|HAMAP-Rule:MF_03135} | Oligoribonuclease, mitochondrial |
| P31946 | Q9Y3B8 | YWHAB | REXO2 | Y | Y | Neurons | Neurons | --- | --- | --- | --- | --- | 14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed | Oligoribonuclease, mitochondrial |